Thanks for the input all. I decided seeing as though none of the fuses were gone and moving the indicator stalk didnt do much to fix the headlights. Turns out one of them has surged, totally blowing the fillament so that is wasnt even there anymore in turn causing the other fillament to partially open and obviously blow aswel. Being halogen it has 2 fillaments so that fits the reason that highbeam would work yet low beam wouldnt. 2 new globes, $22 later and all is well.

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Honda Hannspree Edition CBR 600 RR - SOLD
Yamaha FZ1N - Purchased